Gene loci information

Isoforms of this gene

  • There are 14 isoforms that are expressed from this gene.
  • The longest transcript is g14219.t1
  • List of isoforms

g14219.t1, g14219.t2, g14219.t3, g14219.t4, g14219.t5, g14219.t6, g14219.t8, g14219.t9, g14219.t10, g14219.t11, g14219.t12, g14219.t13, g14219.t14, g14219.t16

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 2 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length
ko00220
ko00250
ko00290
ko01100
ko01110
ko01210
ko01230
ko00220
ko00250
ko00710
ko01100
ko01120
ko01200
ko01210
ko01230

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g14219.t1) is OG0001597. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012058575.1, XP_012058574.1, XP_012058573.1
Apis mellifera AMELL 1 GB40451-PA
Culicoides sonorensis CSONO 2 CSON015281-1, CSON015276-1
Polypedilum nubifer PNUBI 1 Pn.02424
Polypedilum vanderplanki PVAND 2 g14219.t1, g14220.t1
Polypedilum pembai PPEMB 1 g5000.t1
Belgica antarctica BANTA 0 none
Clunio marinus CMARI 1 CRK91319.1
Aedes aegypti lvpagwg AAEGYL 2 AAEL028144-PA, AAEL009872-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 2 EDS45787.1, EDS40556.1
Culex quinquefasciatus CQUIN 2 CPIJ017506-PA, CPIJ014256-PA
Anopheles atroparvus AATRO 1 AATE003308-PA
Anopheles sinensis china ASINEC 1 ASIC017077-PA
Anopheles dirus ADIRU 1 ADIR002311-PA
Anopheles farauti AFARA 1 AFAF018592-PA
Anopheles epiroticus AEPIR 1 AEPI007637-PA
Anopheles christyi ACHRI 1 ACHR005230-PA
Anopheles merus AMERU 1 AMEM001725-PA
Anopheles melas AMELA 2 AMEC004320-PA, AMEC003304-PA
Anopheles arabiensis AARAB 1 AARA002588-PA
Anopheles coluzzii ACOLU 1 ACOM022755-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON000901-PA
Anopheles gambiae AGAMB 1 AGAP000901-PA
Anopheles quadriannulatus AQUAD 1 AQUA011459-PA
Anopheles minimus AMINI 1 AMIN001087-PA
Anopheles culicifacies ACULI 1 ACUA015412-PA
Anopheles funestus AFUNE 1 AFUN002252-PA
Anopheles stephensi indian ASTEPI 1 ASTEI03494-PA
Anopheles stephensi ASTEP 1 ASTE000344-PA
Anopheles albimanus AALBI 1 AALB006338-PA
Anopheles darlingi ADARL 1 ADAC004538-PA
Drosophila willistoni DWILL 1 FBpp0246213
Drosophila pseudoobscura DPSEU 2 FBpp0336505, FBpp0272803
Drosophila persimilis DPERS 2 FBpp0180326, FBpp0182173
Drosophila ananassae DANAN 2 FBpp0341617, FBpp0122598
Drosophila melanogaster DMELA 1 FBpp0073600
Drosophila sechellia DSECH 1 FBpp0193105
Drosophila simulans DSIMU 2 FBpp0210354, FBpp0327422
Drosophila erecta DEREC 1 FBpp0136323
Drosophila yakuba DYAKU 1 FBpp0262081
Drosophila virilis DVIRI 1 FBpp0229237
Drosophila mojavensis DMOJA 1 FBpp0386463
Drosophila grimshawi DGRIM 1 FBpp0158399
Lucilia cuprina LCUPR 2 KNC22662, KNC21531
Musca domestica MDOME 1 MDOA004076-PA
Stomoxys calcitrans SCALC 1 SCAU006042-PA
Glossina brevipalpis GBREV 2 GBRI014552-PA, GBRI043322-PA
Glossina palpalis GPALP 2 GPPI029189-PA, GPPI002786-PA
Glossina austeni GAUST 2 GAUT038545-PA, GAUT045408-PA
Glossina pallidipes GPALL 2 GPAI015473-PA, GPAI020124-PA
Glossina morsitans GMORS 2 GMOY005378-PA, GMOY004367-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g14219.t1) is OG0001724. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN9811_c0_g1_i31.p1, TRINITY_DN33770_c0_g1_i1.p1, TRINITY_DN1295_c0_g1_i4.p1
Parochlus steinenii PSTEI PSG12474, PSG12475
Trissopelopia nemorum TNEMO TRINITY_DN4032_c0_g2_i2.p1, TRINITY_DN10325_c0_g1_i13.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN160_c0_g1_i6.p1
Telmatogeton pecinata TPECI TRINITY_DN3867_c1_g2_i1.p1, TRINITY_DN3867_c1_g1_i1.p1, TRINITY_DN0_c13241_g1_i1.p1, TRINITY_DN46632_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN39397_c0_g1_i1.p2, TRINITY_DN50202_c0_g1_i1.p1, TRINITY_DN76680_c0_g1_i1.p2, TRINITY_DN1555_c0_g1_i1.p1
Clunio marinus CMARI CRK91319.1
Cardiocladius sp CARDI TRINITY_DN10396_c0_g1_i11.p1, TRINITY_DN56551_c0_g1_i1.p1
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE TRINITY_DN207950_c0_g1_i1.p1, TRINITY_DN20820_c6_g3_i1.p1, TRINITY_DN86036_c0_g1_i2.p1, TRINITY_DN31498_c0_g1_i1.p1, TRINITY_DN20820_c6_g1_i2.p2, TRINITY_DN2188_c2_g1_i1.p1, TRINITY_DN20820_c0_g1_i14.p1, TRINITY_DN2188_c0_g1_i14.p1, TRINITY_DN231287_c0_g1_i1.p1, TRINITY_DN259814_c0_g1_i1.p1
Chironomus riparius CRIPA g12930.t1
Chironomus columbiensis CCOLU TRINITY_DN21895_c0_g1_i1.p1, TRINITY_DN667_c0_g1_i2.p1, TRINITY_DN65111_c0_g1_i1.p1
Chironomus tentans CTENT g13222.t1
Chironomus dilutus CDILU TRINITY_DN1381_c1_g1_i4.p1
Polypedilum nubifer PNUBI Pn.02424
Polypedilum vanderplanki PVAND g14219.t1
Polypedilum pembai PPEMB g5000.t1
Culicoides sonorensis CSONO CSON015281-1, CSON015276-1
Aedes aegypti lvpagwg AAEGYL AAEL028144-PA, AAEL009872-PA
Anopheles gambiae AGAMB AGAP000901-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation