Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g16896.t1
  • List of isoforms

g16896.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko01040
ko01100
ko01212
ko03320
ko04152
ko04212
ko04936

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g16896.t1) is OG0000067. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 10 XP_012062865.1, XP_012062682.1, XP_012061963.1, XP_012062688.1, XP_012062687.1, XP_012062680.1, XP_012062683.1, XP_012062685.1, XP_012062684.1, XP_012054646.1
Apis mellifera AMELL 7 GB51236-PA, GB48193-PA, GB42218-PA, GB51238-PA, GB40659-PA, GB42219-PA, GB48195-PA
Culicoides sonorensis CSONO 10 CSON009060-1, CSON013525-1, CSON002638-1, CSON000641-1, CSON002025-1, CSON014383-1, CSON010926-1, CSON004764-1, CSON001645-1, CSON010739-1
Polypedilum nubifer PNUBI 11 Pn.09352, Pn.05085, Pn.07367, Pn.01034, Pn.16725, Pn.10382, Pn.08580, Pn.09353, Pn.13705, Pn.06943, Pn.08578
Polypedilum vanderplanki PVAND 18 g15057.t1, g15059.t1, g10641.t1, g16896.t1, g16389.t1, g1405.t1, g10639.t1, g10642.t1, g1402.t1, g3030.t1, g75.t1, g3725.t1, g1404.t1, g1403.t1, g115.t1, g1406.t1, g3031.t1, g15058.t1
Polypedilum pembai PPEMB 17 g6844.t1, g46.t1, g5268.t1, g2272.t1, g12454.t1, g14965.t1, g10560.t1, g12861.t1, g6843.t1, g7239.t1, g12297.t1, g4005.t1, g689.t1, g5267.t1, g1891.t1, g14197.t1, g6725.t1
Belgica antarctica BANTA 7 IU25_12110-mRNA-1, IU25_05406-mRNA-1, IU25_12382-mRNA-1, IU25_08673-mRNA-1, IU25_06120-mRNA-1, IU25_03180-mRNA-1, IU25_05365-mRNA-1
Clunio marinus CMARI 3 CRK88658.1, CRK98772.1, CRK88979.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL004573-PB, AAEL026878-PA, AAEL003622-PA, AAEL003203-PE, AAEL003645-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS35637.1, EDS40304.1, EDS40308.1, EDS40306.1, EDS40305.1
Culex quinquefasciatus CQUIN 5 CPIJ013750-PA, CPIJ013749-PA, CPIJ013748-PA, CPIJ011097-PA, CPIJ013752-PA
Anopheles atroparvus AATRO 5 AATE018483-PA, AATE003869-PA, AATE003066-PA, AATE017174-PA, AATE007159-PA
Anopheles sinensis china ASINEC 4 ASIC013829-PA, ASIC013827-PA, ASIC011122-PA, ASIC013828-PA
Anopheles dirus ADIRU 4 ADIR010381-PA, ADIR008283-PA, ADIR003265-PA, ADIR003261-PA
Anopheles farauti AFARA 4 AFAF019233-PA, AFAF012890-PA, AFAF003296-PA, AFAF018255-PA
Anopheles epiroticus AEPIR 4 AEPI009927-PA, AEPI003883-PA, AEPI003879-PA, AEPI009790-PA
Anopheles christyi ACHRI 4 ACHR007638-PA, ACHR006151-PA, ACHR004638-PA, ACHR003539-PA
Anopheles merus AMERU 3 AMEM002454-PA, AMEM003516-PA, AMEM008901-PA
Anopheles melas AMELA 5 AMEC018314-PA, AMEC003699-PA, AMEC019954-PA, AMEC012675-PA, AMEC009449-PA
Anopheles arabiensis AARAB 4 AARA004883-PA, AARA004879-PB, AARA002164-PA, AARA001498-PA
Anopheles coluzzii ACOLU 4 ACOM034558-PA, ACOM037238-PA, ACOM037239-PA, ACOM028347-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON003418-PA, ACON003051-PB, ACON001713-PA, ACON013071-PA, ACON003049-PA
Anopheles gambiae AGAMB 5 AGAP003051-PA, AGAP003049-PA, AGAP013071-PA, AGAP001713-PA, AGAP003418-PA
Anopheles quadriannulatus AQUAD 4 AQUA000115-PA, AQUA000111-PA, AQUA000582-PA, AQUA010253-PA
Anopheles minimus AMINI 4 AMIN003755-PA, AMIN003522-PA, AMIN003859-PA, AMIN003759-PA
Anopheles culicifacies ACULI 5 ACUA017438-PA, ACUA007157-PA, ACUA007151-PA, ACUA005658-PA, ACUA024098-PA
Anopheles funestus AFUNE 5 AFUN007854-PA, AFUN011754-PA, AFUN021837-PA, AFUN021836-PA, AFUN002314-PA
Anopheles stephensi indian ASTEPI 3 ASTEI03365-PA, ASTEI03329-PA, ASTEI03112-PA
Anopheles stephensi ASTEP 4 ASTE008096-PA, ASTE006887-PA, ASTE003127-PA, ASTE008092-PA
Anopheles albimanus AALBI 3 AALB003583-PA, AALB003582-PA, AALB003394-PA
Anopheles darlingi ADARL 5 ADAC010119-PA, ADAC010110-PA, ADAC010125-PA, ADAC010123-PA, ADAC001186-PA
Drosophila willistoni DWILL 7 FBpp0242284, FBpp0243550, FBpp0242286, FBpp0240516, FBpp0246329, FBpp0243549, FBpp0243075
Drosophila pseudoobscura DPSEU 9 FBpp0283734, FBpp0283409, FBpp0283141, FBpp0337916, FBpp0274382, FBpp0330348, FBpp0282299, FBpp0274143, FBpp0284581
Drosophila persimilis DPERS 9 FBpp0188568, FBpp0191423, FBpp0178166, FBpp0187224, FBpp0179776, FBpp0186424, FBpp0178168, FBpp0179937, FBpp0191421
Drosophila ananassae DANAN 9 FBpp0127218, FBpp0121696, FBpp0119386, FBpp0119366, FBpp0121151, FBpp0121153, FBpp0120780, FBpp0121152, FBpp0119384
Drosophila melanogaster DMELA 6 FBpp0075926, FBpp0084939, FBpp0082205, FBpp0082095, FBpp0082064, FBpp0084937
Drosophila sechellia DSECH 6 FBpp0206715, FBpp0205571, FBpp0193645, FBpp0193649, FBpp0205513, FBpp0205512
Drosophila simulans DSIMU 6 FBpp0217295, FBpp0215614, FBpp0215636, FBpp0212673, FBpp0217239, FBpp0217238
Drosophila erecta DEREC 5 FBpp0130498, FBpp0137495, FBpp0134011, FBpp0130500, FBpp0138079
Drosophila yakuba DYAKU 6 FBpp0357934, FBpp0271207, FBpp0268411, FBpp0271267, FBpp0268413, FBpp0271208
Drosophila virilis DVIRI 5 FBpp0237582, FBpp0224830, FBpp0224827, FBpp0224825, FBpp0237583
Drosophila mojavensis DMOJA 5 FBpp0173542, FBpp0159701, FBpp0390564, FBpp0159702, FBpp0173544
Drosophila grimshawi DGRIM 5 FBpp0152330, FBpp0152332, FBpp0152328, FBpp0155135, FBpp0155124
Lucilia cuprina LCUPR 5 KNC32243, KNC25467, KNC30749, KNC25461, KNC32244
Musca domestica MDOME 7 MDOA013127-PA, MDOA010540-PB, MDOA007093-PA, MDOA013128-PA, MDOA003517-PA, MDOA000857-PA, MDOA010981-PA
Stomoxys calcitrans SCALC 11 SCAU012985-PA, SCAU004125-PA, SCAU010879-PA, SCAU009207-PA, SCAU008664-PA, SCAU006430-PA, SCAU002603-PA, SCAU001561-PA, SCAU005543-PA, SCAU016178-PA, SCAU002571-PA
Glossina brevipalpis GBREV 5 GBRI012566-PA, GBRI025107-PA, GBRI013129-PA, GBRI013128-PA, GBRI025623-PA
Glossina palpalis GPALP 6 GPPI039528-PA, GPPI039529-PA, GPPI017970-PA, GPPI015828-PA, GPPI015827-PA, GPPI029615-PA
Glossina austeni GAUST 5 GAUT043801-PA, GAUT015638-PA, GAUT039897-PA, GAUT043800-PA, GAUT025851-PA
Glossina pallidipes GPALL 6 GPAI014722-PA, GPAI012803-PA, GPAI045155-PA, GPAI001371-PA, GPAI001372-PA, GPAI046863-PA
Glossina morsitans GMORS 6 GMOY013341-PA, GMOY013340-PA, GMOY009297-PA, GMOY001578-PA, GMOY011559-PA, GMOY013342-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g16896.t1) is OG0030799. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON none
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN none
Telmatogeton pecinata TPECI none
Cricotopus draysoni CDRAY none
Clunio marinus CMARI none
Cardiocladius sp CARDI none
Belgica antarctica BANTA none
Kiefferophyes invenustulus KINVE none
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU none
Chironomus tentans CTENT none
Chironomus dilutus CDILU none
Polypedilum nubifer PNUBI Pn.10382
Polypedilum vanderplanki PVAND g16896.t1
Polypedilum pembai PPEMB g7239.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL none
Anopheles gambiae AGAMB none

This gene has not been clustered with other genes, so there is no gene tree.

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation