Gene loci information

Isoforms of this gene

  • There are 3 isoforms that are expressed from this gene.
  • The longest transcript is g6925.t1
  • List of isoforms

g6925.t1, g6925.t2, g6925.t3

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Pathway

  • This gene belongs to the following 1 pathways
## Warning in keggs == k_to_ko$V1: longer object length is not a multiple of
## shorter object length

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g6925.t1) is OG0006238. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 0 none
Culicoides sonorensis CSONO 0 none
Polypedilum nubifer PNUBI 1 Pn.08313
Polypedilum vanderplanki PVAND 1 g6925.t1
Polypedilum pembai PPEMB 1 g8234.t1
Belgica antarctica BANTA 1 IU25_12343-mRNA-1
Clunio marinus CMARI 1 CRL06608.1
Aedes aegypti lvpagwg AAEGYL 1 AAEL014391-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 1 EDS29562.1
Culex quinquefasciatus CQUIN 1 CPIJ007427-PA
Anopheles atroparvus AATRO 1 AATE010397-PA
Anopheles sinensis china ASINEC 2 ASIC017430-PA, ASIC017427-PA
Anopheles dirus ADIRU 1 ADIR007385-PA
Anopheles farauti AFARA 1 AFAF010432-PA
Anopheles epiroticus AEPIR 1 AEPI008255-PA
Anopheles christyi ACHRI 1 ACHR006041-PA
Anopheles merus AMERU 1 AMEM004825-PA
Anopheles melas AMELA 1 AMEC003001-PA
Anopheles arabiensis AARAB 1 AARA008467-PA
Anopheles coluzzii ACOLU 1 ACOM039480-PA
Anopheles coluzzii ngousso ACOLUN 1 ACON006593-PA
Anopheles gambiae AGAMB 1 AGAP006593-PA
Anopheles quadriannulatus AQUAD 1 AQUA004700-PA
Anopheles minimus AMINI 1 AMIN007800-PA
Anopheles culicifacies ACULI 1 ACUA023466-PA
Anopheles funestus AFUNE 1 AFUN020457-PA
Anopheles stephensi indian ASTEPI 1 ASTEI02699-PA
Anopheles stephensi ASTEP 1 ASTE007826-PA
Anopheles albimanus AALBI 1 AALB005060-PA
Anopheles darlingi ADARL 1 ADAC010141-PA
Drosophila willistoni DWILL 1 FBpp0242564
Drosophila pseudoobscura DPSEU 1 FBpp0282926
Drosophila persimilis DPERS 1 FBpp0177587
Drosophila ananassae DANAN 1 FBpp0119398
Drosophila melanogaster DMELA 1 FBpp0292332
Drosophila sechellia DSECH 1 FBpp0193662
Drosophila simulans DSIMU 1 FBpp0328378
Drosophila erecta DEREC 1 FBpp0130514
Drosophila yakuba DYAKU 1 FBpp0357855
Drosophila virilis DVIRI 1 FBpp0224801
Drosophila mojavensis DMOJA 1 FBpp0172606
Drosophila grimshawi DGRIM 1 FBpp0152304
Lucilia cuprina LCUPR 1 KNC23498
Musca domestica MDOME 2 MDOA011935-PA, MDOA003420-PA
Stomoxys calcitrans SCALC 1 SCAU006613-PA
Glossina brevipalpis GBREV 1 GBRI006396-PA
Glossina palpalis GPALP 1 GPPI038504-PA
Glossina austeni GAUST 1 GAUT037335-PA
Glossina pallidipes GPALL 1 GPAI007580-PA
Glossina morsitans GMORS 1 GMOY000771-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g6925.t1) is OG0007100. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN5147_c0_g1_i10.p1
Parochlus steinenii PSTEI none
Trissopelopia nemorum TNEMO TRINITY_DN1755_c0_g2_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN4666_c0_g3_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN7_c0_g4_i1.p1, TRINITY_DN0_c284_g3_i1.p1, TRINITY_DN0_c1264_g1_i1.p2
Cricotopus draysoni CDRAY TRINITY_DN5318_c0_g1_i1.p1
Clunio marinus CMARI CRL06608.1
Cardiocladius sp CARDI TRINITY_DN2494_c0_g3_i1.p2, TRINITY_DN2494_c0_g1_i10.p1
Belgica antarctica BANTA IU25_12343-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN6121_c0_g1_i8.p1, TRINITY_DN194908_c0_g1_i1.p1, TRINITY_DN2880_c0_g1_i8.p1
Chironomus riparius CRIPA g16558.t1
Chironomus columbiensis CCOLU TRINITY_DN1686_c0_g2_i1.p1
Chironomus tentans CTENT g4687.t1
Chironomus dilutus CDILU TRINITY_DN1433_c2_g4_i2.p1
Polypedilum nubifer PNUBI Pn.08313
Polypedilum vanderplanki PVAND g6925.t1
Polypedilum pembai PPEMB g8234.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL014391-PA
Anopheles gambiae AGAMB AGAP006593-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation