Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g8786.t1
  • List of isoforms

g8786.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04624

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g8786.t1) is OG0000105. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 2 XP_012064430.1, XP_012057432.1
Apis mellifera AMELL 2 GB42981-PA, GB42685-PA
Culicoides sonorensis CSONO 7 CSON007471-1, CSON007605-1, CSON001919-1, CSON007453-1, CSON007472-1, CSON010623-1, CSON003942-1
Polypedilum nubifer PNUBI 8 Pn.10433, Pn.00899, Pn.03964, Pn.11328, Pn.11327, Pn.03188, Pn.10432, Pn.10235
Polypedilum vanderplanki PVAND 8 g8784.t1, g9237.t1, g7229.t1, g8786.t1, g8785.t1, g905.t1, g906.t1, g4607.t1
Polypedilum pembai PPEMB 8 g12776.t1, g8769.t1, g11117.t1, g852.t1, g7601.t1, g7927.t1, g851.t1, g10790.t1
Belgica antarctica BANTA 3 IU25_10768-mRNA-1, IU25_06018-mRNA-1, IU25_11184-mRNA-1
Clunio marinus CMARI 5 CRK95824.1, CRK95822.1, CRK99328.1, CRK86562.1, CRK97738.1
Aedes aegypti lvpagwg AAEGYL 8 AAEL000652-PB, AAEL009176-PA, AAEL003889-PA, AAEL022879-PA, AAEL007626-PA, AAEL007064-PA, AAEL003894-PA, AAEL009178-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 13 EDS42147.1, EDS41791.1, EDS39917.1, EDS39794.1, EDS41793.1, EDS26396.1, EDS42144.1, EDS42146.1, EDS39793.1, EDS42148.1, EDS42143.1, EDS39916.1, EDS32378.1
Culex quinquefasciatus CQUIN 13 CPIJ004324-PA, CPIJ003613-PA, CPIJ013557-PA, CPIJ004321-PA, CPIJ004320-PA, CPIJ008997-PA, CPIJ004323-PA, CPIJ005217-PA, CPIJ004229-PA, CPIJ004231-PA, CPIJ004325-PA, CPIJ013556-PA, CPIJ003612-PA
Anopheles atroparvus AATRO 5 AATE003194-PA, AATE020772-PA, AATE003586-PA, AATE020521-PA, AATE008034-PA
Anopheles sinensis china ASINEC 7 ASIC003327-PA, ASIC003326-PA, ASIC019060-PA, ASIC018224-PA, ASIC000535-PA, ASIC020162-PA, ASIC020161-PA
Anopheles dirus ADIRU 6 ADIR003625-PA, ADIR003518-PA, ADIR000553-PA, ADIR015985-PA, ADIR015986-PA, ADIR003516-PA
Anopheles farauti AFARA 7 AFAF018242-PA, AFAF014459-PA, AFAF004014-PA, AFAF010914-PA, AFAF021828-PA, AFAF015230-PA, AFAF001591-PA
Anopheles epiroticus AEPIR 6 AEPI009256-PA, AEPI015407-PA, AEPI009258-PA, AEPI002293-PA, AEPI015408-PA, AEPI005496-PA
Anopheles christyi ACHRI 5 ACHR009179-PA, ACHR005689-PA, ACHR004102-PA, ACHR015106-PA, ACHR008721-PA
Anopheles merus AMERU 6 AMEM011688-PA, AMEM006274-PA, AMEM015948-PA, AMEM015555-PA, AMEM007311-PA, AMEM006988-PA
Anopheles melas AMELA 6 AMEC007763-PA, AMEC000793-PA, AMEC022233-PA, AMEC002827-PA, AMEC010209-PA, AMEC013524-PA
Anopheles arabiensis AARAB 7 AARA003478-PA, AARA004617-PA, AARA017962-PA, AARA017646-PA, AARA016474-PA, AARA016475-PA, AARA017963-PA
Anopheles coluzzii ACOLU 7 ACOM043213-PA, ACOM037657-PA, ACOM037656-PA, ACOM043183-PA, ACOM042572-PA, ACOM029651-PA, ACOM029649-PA
Anopheles coluzzii ngousso ACOLUN 7 ACON006761-PA, ACON004456-PA, ACON002798-PA, ACON002799-PA, ACON002796-PA, ACON012409-PA, ACON004455-PA
Anopheles gambiae AGAMB 7 AGAP004456-PA, AGAP002799-PA, AGAP006761-PA, AGAP004455-PA, AGAP002798-PA, AGAP012409-PA, AGAP002796-PA
Anopheles quadriannulatus AQUAD 6 AQUA016644-PA, AQUA017062-PA, AQUA016645-PA, AQUA016980-PA, AQUA009400-PA, AQUA009402-PA
Anopheles minimus AMINI 7 AMIN003902-PA, AMIN003900-PA, AMIN015896-PA, AMIN015979-PA, AMIN003903-PA, AMIN015895-PA, AMIN010081-PA
Anopheles culicifacies ACULI 5 ACUA021911-PA, ACUA029178-PA, ACUA016914-PA, ACUA026658-PA, ACUA018203-PA
Anopheles funestus AFUNE 4 AFUN016616-PA, AFUN021197-PA, AFUN020019-PA, AFUN016488-PA
Anopheles stephensi indian ASTEPI 4 ASTEI10972-PA, ASTEI04897-PA, ASTEI11189-PA, ASTEI08630-PA
Anopheles stephensi ASTEP 6 ASTE016199-PA, ASTE009324-PA, ASTE016198-PA, ASTE010371-PA, ASTE009326-PA, ASTE004573-PA
Anopheles albimanus AALBI 4 AALB015801-PA, AALB015800-PA, AALB006170-PA, AALB002296-PA
Anopheles darlingi ADARL 6 ADAC007669-PA, ADAC003874-PA, ADAC002705-PA, ADAC007671-PA, ADAC003875-PA, ADAC005058-PA
Drosophila willistoni DWILL 3 FBpp0241385, FBpp0239724, FBpp0245890
Drosophila pseudoobscura DPSEU 3 FBpp0275484, FBpp0286245, FBpp0274078
Drosophila persimilis DPERS 3 FBpp0186994, FBpp0184834, FBpp0186800
Drosophila ananassae DANAN 3 FBpp0114003, FBpp0126826, FBpp0127556
Drosophila melanogaster DMELA 3 FBpp0074861, FBpp0076237, FBpp0074817
Drosophila sechellia DSECH 3 FBpp0196405, FBpp0206579, FBpp0196461
Drosophila simulans DSIMU 3 FBpp0213163, FBpp0212540, FBpp0210736
Drosophila erecta DEREC 3 FBpp0132904, FBpp0134278, FBpp0132215
Drosophila yakuba DYAKU 3 FBpp0267074, FBpp0264975, FBpp0265799
Drosophila virilis DVIRI 3 FBpp0228520, FBpp0227499, FBpp0225643
Drosophila mojavensis DMOJA 3 FBpp0160528, FBpp0163182, FBpp0162157
Drosophila grimshawi DGRIM 3 FBpp0148274, FBpp0148273, FBpp0149242
Lucilia cuprina LCUPR 2 KNC23994, KNC23992
Musca domestica MDOME 3 MDOA000651-PA, MDOA008244-PA, MDOA006497-PA
Stomoxys calcitrans SCALC 4 SCAU013161-PA, SCAU005188-PA, SCAU012192-PA, SCAU003523-PA
Glossina brevipalpis GBREV 1 GBRI016282-PA
Glossina palpalis GPALP 1 GPPI024217-PA
Glossina austeni GAUST 1 GAUT013499-PA
Glossina pallidipes GPALL 2 GPAI047708-PA, GPAI024650-PA
Glossina morsitans GMORS 2 GMOY011181-PA, GMOY011180-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g8786.t1) is OG0000307. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN18514_c0_g2_i5.p1, TRINITY_DN36972_c1_g1_i1.p1, TRINITY_DN18514_c0_g1_i1.p1, TRINITY_DN49_c6_g1_i4.p1, TRINITY_DN2803_c0_g4_i1.p1, TRINITY_DN59141_c0_g1_i1.p1
Parochlus steinenii PSTEI PSG11252, PSG11847, PSG03049, PSG11809, PSG11852
Trissopelopia nemorum TNEMO TRINITY_DN822_c0_g1_i3.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN1713_c0_g1_i1.p1, TRINITY_DN10631_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN15193_c0_g1_i1.p1, TRINITY_DN57877_c0_g1_i1.p1
Cricotopus draysoni CDRAY TRINITY_DN2893_c0_g1_i1.p1, TRINITY_DN106408_c0_g1_i1.p1, TRINITY_DN11839_c0_g1_i1.p1, TRINITY_DN107242_c0_g1_i1.p1, TRINITY_DN1839_c0_g1_i3.p1, TRINITY_DN1879_c0_g1_i1.p1, TRINITY_DN9512_c0_g1_i1.p1, TRINITY_DN512_c0_g1_i2.p1, TRINITY_DN7810_c0_g1_i1.p1
Clunio marinus CMARI CRK95824.1, CRK95822.1, CRK99328.1, CRK86562.1
Cardiocladius sp CARDI TRINITY_DN676_c1_g1_i3.p1, TRINITY_DN13018_c0_g1_i1.p1, TRINITY_DN5799_c0_g1_i1.p1
Belgica antarctica BANTA IU25_10768-mRNA-1, IU25_06018-mRNA-1, IU25_11184-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN18967_c0_g1_i7.p1, TRINITY_DN18967_c2_g1_i1.p1, TRINITY_DN45164_c0_g1_i1.p1, TRINITY_DN2164_c1_g1_i8.p1, TRINITY_DN72872_c3_g1_i1.p1, TRINITY_DN51397_c0_g1_i1.p1, TRINITY_DN24425_c0_g1_i1.p1, TRINITY_DN268917_c0_g1_i1.p1, TRINITY_DN27152_c0_g1_i1.p1
Chironomus riparius CRIPA g2153.t1, g8825.t1, g8824.t1, g8823.t1
Chironomus columbiensis CCOLU TRINITY_DN30170_c0_g1_i1.p1, TRINITY_DN17305_c0_g1_i1.p1, TRINITY_DN2316_c0_g1_i11.p1, TRINITY_DN43903_c0_g1_i1.p1
Chironomus tentans CTENT g12080.t1, g12866.t1, g12079.t1, g12081.t1, g16214.t1
Chironomus dilutus CDILU TRINITY_DN5434_c0_g1_i2.p1, TRINITY_DN1935_c0_g1_i17.p1, TRINITY_DN769_c0_g1_i5.p1, TRINITY_DN17082_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.11327, Pn.10433, Pn.00899, Pn.03964, Pn.11328, Pn.10432
Polypedilum vanderplanki PVAND g8784.t1, g8786.t1, g7229.t1, g905.t1, g8785.t1, g906.t1, g4607.t1
Polypedilum pembai PPEMB g8769.t1, g11117.t1, g851.t1, g10790.t1, g7927.t1
Culicoides sonorensis CSONO CSON007471-1, CSON007453-1, CSON007472-1, CSON010623-1
Aedes aegypti lvpagwg AAEGYL AAEL022879-PA, AAEL003889-PA, AAEL009176-PA, AAEL007064-PA, AAEL009178-PA, AAEL003894-PA
Anopheles gambiae AGAMB AGAP004456-PA, AGAP002799-PA, AGAP004455-PA, AGAP002798-PA, AGAP002796-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation