Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g1404.t1
  • List of isoforms

g1404.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko01040
ko01100
ko01212
ko03320
ko04152
ko04212
ko04936

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g1404.t1) is OG0000067. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 10 XP_012062865.1, XP_012062682.1, XP_012061963.1, XP_012062688.1, XP_012062687.1, XP_012062680.1, XP_012062683.1, XP_012062685.1, XP_012062684.1, XP_012054646.1
Apis mellifera AMELL 7 GB51236-PA, GB48193-PA, GB42218-PA, GB51238-PA, GB40659-PA, GB42219-PA, GB48195-PA
Culicoides sonorensis CSONO 10 CSON009060-1, CSON013525-1, CSON002638-1, CSON000641-1, CSON002025-1, CSON014383-1, CSON010926-1, CSON004764-1, CSON001645-1, CSON010739-1
Polypedilum nubifer PNUBI 11 Pn.09352, Pn.05085, Pn.07367, Pn.01034, Pn.16725, Pn.10382, Pn.08580, Pn.09353, Pn.13705, Pn.06943, Pn.08578
Polypedilum vanderplanki PVAND 18 g15057.t1, g15059.t1, g10641.t1, g16896.t1, g16389.t1, g1405.t1, g10639.t1, g10642.t1, g1402.t1, g3030.t1, g75.t1, g3725.t1, g1404.t1, g1403.t1, g115.t1, g1406.t1, g3031.t1, g15058.t1
Polypedilum pembai PPEMB 17 g6844.t1, g46.t1, g5268.t1, g2272.t1, g12454.t1, g14965.t1, g10560.t1, g12861.t1, g6843.t1, g7239.t1, g12297.t1, g4005.t1, g689.t1, g5267.t1, g1891.t1, g14197.t1, g6725.t1
Belgica antarctica BANTA 7 IU25_12110-mRNA-1, IU25_05406-mRNA-1, IU25_12382-mRNA-1, IU25_08673-mRNA-1, IU25_06120-mRNA-1, IU25_03180-mRNA-1, IU25_05365-mRNA-1
Clunio marinus CMARI 3 CRK88658.1, CRK98772.1, CRK88979.1
Aedes aegypti lvpagwg AAEGYL 5 AAEL004573-PB, AAEL026878-PA, AAEL003622-PA, AAEL003203-PE, AAEL003645-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 5 EDS35637.1, EDS40304.1, EDS40308.1, EDS40306.1, EDS40305.1
Culex quinquefasciatus CQUIN 5 CPIJ013750-PA, CPIJ013749-PA, CPIJ013748-PA, CPIJ011097-PA, CPIJ013752-PA
Anopheles atroparvus AATRO 5 AATE018483-PA, AATE003869-PA, AATE003066-PA, AATE017174-PA, AATE007159-PA
Anopheles sinensis china ASINEC 4 ASIC013829-PA, ASIC013827-PA, ASIC011122-PA, ASIC013828-PA
Anopheles dirus ADIRU 4 ADIR010381-PA, ADIR008283-PA, ADIR003265-PA, ADIR003261-PA
Anopheles farauti AFARA 4 AFAF019233-PA, AFAF012890-PA, AFAF003296-PA, AFAF018255-PA
Anopheles epiroticus AEPIR 4 AEPI009927-PA, AEPI003883-PA, AEPI003879-PA, AEPI009790-PA
Anopheles christyi ACHRI 4 ACHR007638-PA, ACHR006151-PA, ACHR004638-PA, ACHR003539-PA
Anopheles merus AMERU 3 AMEM002454-PA, AMEM003516-PA, AMEM008901-PA
Anopheles melas AMELA 5 AMEC018314-PA, AMEC003699-PA, AMEC019954-PA, AMEC012675-PA, AMEC009449-PA
Anopheles arabiensis AARAB 4 AARA004883-PA, AARA004879-PB, AARA002164-PA, AARA001498-PA
Anopheles coluzzii ACOLU 4 ACOM034558-PA, ACOM037238-PA, ACOM037239-PA, ACOM028347-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON003418-PA, ACON003051-PB, ACON001713-PA, ACON013071-PA, ACON003049-PA
Anopheles gambiae AGAMB 5 AGAP003051-PA, AGAP003049-PA, AGAP013071-PA, AGAP001713-PA, AGAP003418-PA
Anopheles quadriannulatus AQUAD 4 AQUA000115-PA, AQUA000111-PA, AQUA000582-PA, AQUA010253-PA
Anopheles minimus AMINI 4 AMIN003755-PA, AMIN003522-PA, AMIN003859-PA, AMIN003759-PA
Anopheles culicifacies ACULI 5 ACUA017438-PA, ACUA007157-PA, ACUA007151-PA, ACUA005658-PA, ACUA024098-PA
Anopheles funestus AFUNE 5 AFUN007854-PA, AFUN011754-PA, AFUN021837-PA, AFUN021836-PA, AFUN002314-PA
Anopheles stephensi indian ASTEPI 3 ASTEI03365-PA, ASTEI03329-PA, ASTEI03112-PA
Anopheles stephensi ASTEP 4 ASTE008096-PA, ASTE006887-PA, ASTE003127-PA, ASTE008092-PA
Anopheles albimanus AALBI 3 AALB003583-PA, AALB003582-PA, AALB003394-PA
Anopheles darlingi ADARL 5 ADAC010119-PA, ADAC010110-PA, ADAC010125-PA, ADAC010123-PA, ADAC001186-PA
Drosophila willistoni DWILL 7 FBpp0242284, FBpp0243550, FBpp0242286, FBpp0240516, FBpp0246329, FBpp0243549, FBpp0243075
Drosophila pseudoobscura DPSEU 9 FBpp0283734, FBpp0283409, FBpp0283141, FBpp0337916, FBpp0274382, FBpp0330348, FBpp0282299, FBpp0274143, FBpp0284581
Drosophila persimilis DPERS 9 FBpp0188568, FBpp0191423, FBpp0178166, FBpp0187224, FBpp0179776, FBpp0186424, FBpp0178168, FBpp0179937, FBpp0191421
Drosophila ananassae DANAN 9 FBpp0127218, FBpp0121696, FBpp0119386, FBpp0119366, FBpp0121151, FBpp0121153, FBpp0120780, FBpp0121152, FBpp0119384
Drosophila melanogaster DMELA 6 FBpp0075926, FBpp0084939, FBpp0082205, FBpp0082095, FBpp0082064, FBpp0084937
Drosophila sechellia DSECH 6 FBpp0206715, FBpp0205571, FBpp0193645, FBpp0193649, FBpp0205513, FBpp0205512
Drosophila simulans DSIMU 6 FBpp0217295, FBpp0215614, FBpp0215636, FBpp0212673, FBpp0217239, FBpp0217238
Drosophila erecta DEREC 5 FBpp0130498, FBpp0137495, FBpp0134011, FBpp0130500, FBpp0138079
Drosophila yakuba DYAKU 6 FBpp0357934, FBpp0271207, FBpp0268411, FBpp0271267, FBpp0268413, FBpp0271208
Drosophila virilis DVIRI 5 FBpp0237582, FBpp0224830, FBpp0224827, FBpp0224825, FBpp0237583
Drosophila mojavensis DMOJA 5 FBpp0173542, FBpp0159701, FBpp0390564, FBpp0159702, FBpp0173544
Drosophila grimshawi DGRIM 5 FBpp0152330, FBpp0152332, FBpp0152328, FBpp0155135, FBpp0155124
Lucilia cuprina LCUPR 5 KNC32243, KNC25467, KNC30749, KNC25461, KNC32244
Musca domestica MDOME 7 MDOA013127-PA, MDOA010540-PB, MDOA007093-PA, MDOA013128-PA, MDOA003517-PA, MDOA000857-PA, MDOA010981-PA
Stomoxys calcitrans SCALC 11 SCAU012985-PA, SCAU004125-PA, SCAU010879-PA, SCAU009207-PA, SCAU008664-PA, SCAU006430-PA, SCAU002603-PA, SCAU001561-PA, SCAU005543-PA, SCAU016178-PA, SCAU002571-PA
Glossina brevipalpis GBREV 5 GBRI012566-PA, GBRI025107-PA, GBRI013129-PA, GBRI013128-PA, GBRI025623-PA
Glossina palpalis GPALP 6 GPPI039528-PA, GPPI039529-PA, GPPI017970-PA, GPPI015828-PA, GPPI015827-PA, GPPI029615-PA
Glossina austeni GAUST 5 GAUT043801-PA, GAUT015638-PA, GAUT039897-PA, GAUT043800-PA, GAUT025851-PA
Glossina pallidipes GPALL 6 GPAI014722-PA, GPAI012803-PA, GPAI045155-PA, GPAI001371-PA, GPAI001372-PA, GPAI046863-PA
Glossina morsitans GMORS 6 GMOY013341-PA, GMOY013340-PA, GMOY009297-PA, GMOY001578-PA, GMOY011559-PA, GMOY013342-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g1404.t1) is OG0000098. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN1335_c0_g1_i9.p1, TRINITY_DN6023_c0_g1_i14.p1, TRINITY_DN26134_c0_g2_i1.p1, TRINITY_DN55398_c0_g1_i1.p1, TRINITY_DN26134_c0_g1_i3.p1
Parochlus steinenii PSTEI PSG01659, PSG07090, PSG06126, PSG07081, PSG06328, PSG09945
Trissopelopia nemorum TNEMO TRINITY_DN2035_c0_g1_i1.p1, TRINITY_DN1457_c2_g1_i1.p1, TRINITY_DN8754_c0_g3_i1.p1, TRINITY_DN5524_c0_g1_i4.p1, TRINITY_DN4911_c0_g1_i1.p1, TRINITY_DN3294_c0_g1_i6.p1, TRINITY_DN1457_c0_g1_i2.p1, TRINITY_DN48_c0_g2_i1.p1
Paraheptagyia tonnoiri PTONN TRINITY_DN781_c6_g1_i1.p1, TRINITY_DN2310_c3_g1_i1.p1, TRINITY_DN833_c0_g2_i1.p1, TRINITY_DN3971_c0_g1_i1.p1, TRINITY_DN2225_c1_g2_i9.p1
Telmatogeton pecinata TPECI TRINITY_DN454_c0_g2_i2.p1, TRINITY_DN454_c0_g1_i5.p1, TRINITY_DN55093_c0_g1_i1.p2, TRINITY_DN7114_c0_g1_i2.p1
Cricotopus draysoni CDRAY TRINITY_DN908_c0_g1_i2.p1, TRINITY_DN8738_c0_g1_i1.p1, TRINITY_DN109300_c0_g1_i1.p1, TRINITY_DN15074_c0_g1_i1.p1, TRINITY_DN104173_c0_g1_i1.p1, TRINITY_DN9261_c0_g1_i1.p1, TRINITY_DN10017_c0_g1_i1.p1, TRINITY_DN12676_c1_g1_i1.p1, TRINITY_DN9030_c0_g1_i1.p1, TRINITY_DN73118_c0_g1_i1.p1, TRINITY_DN6474_c0_g1_i1.p1, TRINITY_DN49062_c0_g1_i1.p1, TRINITY_DN22004_c0_g1_i1.p1, TRINITY_DN9217_c0_g1_i1.p1, TRINITY_DN4087_c0_g1_i1.p1, TRINITY_DN72406_c0_g1_i1.p1, TRINITY_DN37279_c0_g1_i1.p1, TRINITY_DN59761_c0_g1_i1.p1, TRINITY_DN14549_c0_g1_i1.p1, TRINITY_DN12676_c0_g1_i1.p1
Clunio marinus CMARI CRK88221.1, CRL07879.1, CRK88979.1
Cardiocladius sp CARDI TRINITY_DN801_c0_g3_i3.p1, TRINITY_DN801_c0_g1_i1.p1, TRINITY_DN415_c0_g1_i3.p1, TRINITY_DN2926_c0_g1_i4.p1, TRINITY_DN6041_c0_g1_i2.p1, TRINITY_DN1520_c0_g1_i1.p1
Belgica antarctica BANTA IU25_05406-mRNA-1, IU25_05405-mRNA-1, IU25_12382-mRNA-1, IU25_11630-mRNA-1, IU25_03180-mRNA-1, IU25_05365-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN7757_c0_g1_i6.p1, TRINITY_DN40107_c0_g2_i1.p1, TRINITY_DN18794_c0_g1_i3.p1, TRINITY_DN41219_c0_g1_i1.p1
Chironomus riparius CRIPA g8531.t1, g7453.t1, g6563.t1, g7956.t1, g13364.t1, g7846.t1, g12192.t1, g2756.t1, g2755.t1, g2757.t1, g12567.t1, g7178.t1
Chironomus columbiensis CCOLU TRINITY_DN3996_c0_g1_i1.p1, TRINITY_DN8299_c0_g1_i3.p1, TRINITY_DN6948_c0_g4_i2.p1, TRINITY_DN2150_c0_g1_i11.p1, TRINITY_DN6948_c0_g3_i1.p1, TRINITY_DN2404_c7_g1_i3.p1, TRINITY_DN3003_c0_g1_i3.p1, TRINITY_DN3009_c0_g1_i1.p1, TRINITY_DN2549_c0_g1_i7.p1, TRINITY_DN5551_c0_g2_i1.p1, TRINITY_DN13896_c0_g1_i2.p1
Chironomus tentans CTENT g15946.t1, g13161.t1, g11671.t1, g961.t1, g11695.t1, g129.t1, g960.t1, g4566.t1, g15921.t1, g6299.t1
Chironomus dilutus CDILU TRINITY_DN7626_c1_g1_i1.p1, TRINITY_DN10191_c0_g1_i6.p2, TRINITY_DN1908_c0_g1_i2.p1, TRINITY_DN15613_c0_g1_i1.p1, TRINITY_DN28967_c0_g1_i1.p1, TRINITY_DN3805_c0_g1_i1.p1, TRINITY_DN3982_c0_g2_i1.p1, TRINITY_DN12880_c0_g1_i2.p1, TRINITY_DN4046_c0_g1_i4.p1, TRINITY_DN3982_c0_g1_i1.p1
Polypedilum nubifer PNUBI Pn.13476, Pn.13475, Pn.09352, Pn.05085, Pn.07367, Pn.01034, Pn.08580, Pn.09353, Pn.08578
Polypedilum vanderplanki PVAND g12222.t1, g15057.t1, g15059.t1, g10641.t1, g75.t1, g3725.t1, g1405.t1, g10639.t1, g10642.t1, g1404.t1, g3031.t1, g1402.t1, g1406.t1, g15058.t1
Polypedilum pembai PPEMB g8525.t1, g5268.t1, g689.t1, g4005.t1, g2272.t1, g12454.t1, g10560.t1, g12861.t1, g6843.t1, g6725.t1, g1891.t1, g12297.t1
Culicoides sonorensis CSONO CSON013525-1, CSON002638-1, CSON000641-1, CSON002025-1, CSON001645-1, CSON014383-1, CSON010926-1
Aedes aegypti lvpagwg AAEGYL AAEL026878-PA, AAEL003203-PE
Anopheles gambiae AGAMB AGAP001713-PA, AGAP003418-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation