Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g7415.t1
  • List of isoforms

g7415.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

Pathway

  • This gene belongs to the following 1 pathways
ko04613
ko05034
ko05203
ko05322

This gene has too many mapped pathways (>3). Please look at the original KEGG entry above for pathway visualization.

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g7415.t1) is OG0000046. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 3 XP_012055712.1, XP_012059086.1, XP_012055628.1
Apis mellifera AMELL 4 GB47407-PA, GB44318-PA, GB47382-PA, GB47406-PA
Culicoides sonorensis CSONO 0 none
Polypedilum nubifer PNUBI 0 none
Polypedilum vanderplanki PVAND 17 g8326.t1, g6805.t1, g8902.t1, g8247.t1, g6757.t1, g2440.t1, g8327.t1, g7431.t1, g6762.t1, g6809.t1, g7409.t1, g17653.t1, g7400.t1, g8458.t1, g7415.t1, g2452.t1, g8297.t1
Polypedilum pembai PPEMB 3 g1148.t1, g9234.t1, g9233.t1
Belgica antarctica BANTA 1 IU25_12913-mRNA-1
Clunio marinus CMARI 8 CRL07071.1, CRL07054.1, CRL07049.1, CRL07058.1, CRL07075.1, CRL07078.1, CRL07068.1, CRL07063.1
Aedes aegypti lvpagwg AAEGYL 27 AAEL020032-PA, AAEL021577-PA, AAEL021922-PA, AAEL013709-PA, AAEL003689-PB, AAEL021604-PA, AAEL020976-PA, AAEL020118-PA, AAEL003673-PB, AAEL020565-PA, AAEL021405-PA, AAEL000517-PB, AAEL020506-PA, AAEL020914-PA, AAEL021516-PA, AAEL020517-PA, AAEL021956-PA, AAEL021628-PA, AAEL020831-PA, AAEL021540-PA, AAEL003846-PA, AAEL021529-PA, AAEL021058-PA, AAEL020145-PA, AAEL020216-PA, AAEL000501-PB, AAEL021350-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 24 EDS37365.1, EDS37408.1, EDS34168.1, EDS37354.1, EDS37351.1, EDS41770.1, EDS41771.1, EDS37416.1, EDS26760.1, EDS37420.1, EDS37369.1, EDS37391.1, EDS37374.1, EDS34373.1, EDS37385.1, EDS37356.1, EDS41246.1, EDS37346.1, EDS37378.1, EDS37400.1, EDS37404.1, EDS37361.1, EDS37412.1, EDS37396.1
Culex quinquefasciatus CQUIN 24 CPIJ020275-PA, CPIJ012428-PA, CPIJ012397-PA, CPIJ012423-PA, CPIJ015008-PA, CPIJ012444-PA, CPIJ012440-PA, CPIJ012401-PA, CPIJ012383-PA, CPIJ012432-PA, CPIJ012393-PA, CPIJ014768-PA, CPIJ012378-PA, CPIJ012388-PA, CPIJ010359-PA, CPIJ012406-PA, CPIJ015007-PA, CPIJ012448-PA, CPIJ012417-PA, CPIJ012386-PA, CPIJ012452-PA, CPIJ005873-PA, CPIJ012436-PA, CPIJ012410-PA
Anopheles atroparvus AATRO 1 AATE008647-PA
Anopheles sinensis china ASINEC 0 none
Anopheles dirus ADIRU 1 ADIR001584-PA
Anopheles farauti AFARA 1 AFAF010924-PA
Anopheles epiroticus AEPIR 2 AEPI005565-PA, AEPI009605-PA
Anopheles christyi ACHRI 1 ACHR006351-PA
Anopheles merus AMERU 2 AMEM012777-PA, AMEM005252-PA
Anopheles melas AMELA 1 AMEC010125-PA
Anopheles arabiensis AARAB 2 AARA003621-PA, AARA008980-PA
Anopheles coluzzii ACOLU 2 ACOM029233-PA, ACOM027482-PA
Anopheles coluzzii ngousso ACOLUN 6 ACON012574-PA, ACON003909-PA, ACON012558-PA, ACON012885-PA, ACON012586-PA, ACON005023-PA
Anopheles gambiae AGAMB 8 AGAP010724-PA, AGAP012558-PA, AGAP012885-PA, AGAP012574-PA, AGAP005023-PA, AGAP012586-PA, AGAP005026-PA, AGAP003909-PA
Anopheles quadriannulatus AQUAD 1 AQUA002367-PA
Anopheles minimus AMINI 3 AMIN009236-PA, AMIN011507-PA, AMIN004079-PA
Anopheles culicifacies ACULI 2 ACUA020688-PA, ACUA017661-PA
Anopheles funestus AFUNE 1 AFUN006955-PA
Anopheles stephensi indian ASTEPI 6 ASTEI10809-PA, ASTEI10807-PA, ASTEI11786-PA, ASTEI052400-PA, ASTEI04162-PA, ASTEI10870-PA
Anopheles stephensi ASTEP 2 ASTE009252-PA, ASTE009390-PA
Anopheles albimanus AALBI 3 AALB004562-PA, AALB004007-PA, AALB007556-PA
Anopheles darlingi ADARL 3 ADAC004677-PA, ADAC001856-PA, ADAC005676-PA
Drosophila willistoni DWILL 11 FBpp0379728, FBpp0253179, FBpp0239516, FBpp0247854, FBpp0379700, FBpp0239518, FBpp0239922, FBpp0248581, FBpp0253242, FBpp0241953, FBpp0250173
Drosophila pseudoobscura DPSEU 5 FBpp0271976, FBpp0337299, FBpp0330063, FBpp0329801, FBpp0337755
Drosophila persimilis DPERS 10 FBpp0186328, FBpp0187092, FBpp0188520, FBpp0187667, FBpp0187663, FBpp0181906, FBpp0180973, FBpp0187661, FBpp0187659, FBpp0187665
Drosophila ananassae DANAN 23 FBpp0351260, FBpp0126042, FBpp0119084, FBpp0125752, FBpp0125730, FBpp0122502, FBpp0126050, FBpp0124820, FBpp0350786, FBpp0125796, FBpp0122177, FBpp0122470, FBpp0125774, FBpp0122183, FBpp0348376, FBpp0120639, FBpp0342266, FBpp0119082, FBpp0342023, FBpp0123354, FBpp0126052, FBpp0119112, FBpp0123594
Drosophila melanogaster DMELA 23 FBpp0091154, FBpp0091120, FBpp0091140, FBpp0091116, FBpp0091146, FBpp0091134, FBpp0091128, FBpp0091126, FBpp0091114, FBpp0091150, FBpp0091122, FBpp0091152, FBpp0091142, FBpp0091130, FBpp0091124, FBpp0091118, FBpp0085280, FBpp0091132, FBpp0091138, FBpp0091144, FBpp0091148, FBpp0082421, FBpp0091136
Drosophila sechellia DSECH 28 FBpp0195039, FBpp0193160, FBpp0192664, FBpp0193190, FBpp0195107, FBpp0195002, FBpp0193192, FBpp0194658, FBpp0194427, FBpp0194663, FBpp0194645, FBpp0195015, FBpp0193222, FBpp0192639, FBpp0195108, FBpp0192662, FBpp0194667, FBpp0194602, FBpp0196345, FBpp0192636, FBpp0203975, FBpp0194669, FBpp0193226, FBpp0194597, FBpp0196613, FBpp0193322, FBpp0194617, FBpp0192626
Drosophila simulans DSIMU 3 FBpp0210976, FBpp0319038, FBpp0217370
Drosophila erecta DEREC 7 FBpp0129584, FBpp0367927, FBpp0140045, FBpp0140043, FBpp0129567, FBpp0135412, FBpp0369251
Drosophila yakuba DYAKU 4 FBpp0356848, FBpp0259486, FBpp0360595, FBpp0269257
Drosophila virilis DVIRI 23 FBpp0237944, FBpp0237946, FBpp0237937, FBpp0233004, FBpp0231879, FBpp0230757, FBpp0393429, FBpp0237939, FBpp0233983, FBpp0237932, FBpp0237935, FBpp0392137, FBpp0229032, FBpp0229861, FBpp0234227, FBpp0233986, FBpp0237942, FBpp0232816, FBpp0238769, FBpp0232251, FBpp0232995, FBpp0231876, FBpp0228532
Drosophila mojavensis DMOJA 11 FBpp0173369, FBpp0159897, FBpp0170582, FBpp0162041, FBpp0166106, FBpp0173374, FBpp0163085, FBpp0166896, FBpp0163107, FBpp0173376, FBpp0173372
Drosophila grimshawi DGRIM 25 FBpp0157580, FBpp0157262, FBpp0144132, FBpp0158952, FBpp0158948, FBpp0157674, FBpp0157255, FBpp0144110, FBpp0158959, FBpp0152562, FBpp0158950, FBpp0157376, FBpp0157692, FBpp0158941, FBpp0158957, FBpp0157252, FBpp0158961, FBpp0144099, FBpp0157407, FBpp0158946, FBpp0158954, FBpp0157689, FBpp0158943, FBpp0157479, FBpp0145645
Lucilia cuprina LCUPR 2 KNC31949, KNC29757
Musca domestica MDOME 7 MDOA015198-PA, MDOA016967-PA, MDOA010986-PA, MDOA004962-PA, MDOA002457-PB, MDOA012922-PB, MDOA002897-PB
Stomoxys calcitrans SCALC 6 SCAU003474-PA, SCAU012983-PA, SCAU009262-PA, SCAU015491-PA, SCAU011728-PA, SCAU005187-PA
Glossina brevipalpis GBREV 2 GBRI025189-PA, GBRI025839-PA
Glossina palpalis GPALP 1 GPPI019039-PA
Glossina austeni GAUST 2 GAUT003195-PA, GAUT013514-PA
Glossina pallidipes GPALL 1 GPAI024025-PA
Glossina morsitans GMORS 3 GMOY000268-PA, GMOY007493-PA, GMOY002745-PA

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g7415.t1) is OG0000258. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN126553_c0_g1_i1.p2, TRINITY_DN4824_c0_g1_i3.p1
Parochlus steinenii PSTEI PSG06958
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN24822_c0_g1_i2.p1
Telmatogeton pecinata TPECI TRINITY_DN1760_c0_g1_i6.p1
Cricotopus draysoni CDRAY TRINITY_DN97784_c0_g1_i1.p2, TRINITY_DN7969_c0_g1_i1.p1, TRINITY_DN34320_c0_g1_i2.p1, TRINITY_DN24123_c0_g1_i1.p1, TRINITY_DN14126_c1_g1_i1.p1, TRINITY_DN95471_c0_g1_i1.p1, TRINITY_DN41009_c0_g1_i1.p2, TRINITY_DN44640_c0_g1_i1.p3, TRINITY_DN112543_c0_g1_i1.p1
Clunio marinus CMARI CRL07071.1, CRL07054.1, CRL07049.1, CRL07058.1, CRL07075.1, CRL07078.1, CRL07068.1, CRL07063.1
Cardiocladius sp CARDI TRINITY_DN2815_c8_g1_i1.p2
Belgica antarctica BANTA IU25_12913-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN33382_c0_g2_i1.p1, TRINITY_DN1580_c0_g1_i2.p1
Chironomus riparius CRIPA g11589.t1, g14692.t1
Chironomus columbiensis CCOLU TRINITY_DN9903_c0_g2_i1.p1, TRINITY_DN11507_c0_g1_i1.p1, TRINITY_DN15335_c0_g1_i20.p1, TRINITY_DN82076_c0_g1_i1.p1, TRINITY_DN57904_c0_g1_i1.p1, TRINITY_DN15335_c0_g2_i1.p1, TRINITY_DN9903_c0_g1_i8.p1
Chironomus tentans CTENT g14142.t1, g17467.t1, g16760.t1, g10248.t1, g137.t1, g13556.t1, g11659.t1
Chironomus dilutus CDILU TRINITY_DN9524_c0_g1_i4.p1, TRINITY_DN9524_c0_g2_i1.p1, TRINITY_DN37096_c0_g1_i1.p1, TRINITY_DN4740_c0_g1_i18.p1
Polypedilum nubifer PNUBI none
Polypedilum vanderplanki PVAND g8326.t1, g6805.t1, g8902.t1, g8247.t1, g6757.t1, g2440.t1, g8327.t1, g7431.t1, g6762.t1, g6809.t1, g7409.t1, g17653.t1, g7400.t1, g8458.t1, g7415.t1, g2452.t1, g8297.t1
Polypedilum pembai PPEMB g9234.t1, g9295.t1, g9233.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL020032-PA, AAEL021577-PA, AAEL021922-PA, AAEL013709-PA, AAEL003689-PB, AAEL021604-PA, AAEL020976-PA, AAEL020118-PA, AAEL003673-PB, AAEL020565-PA, AAEL021405-PA, AAEL000517-PB, AAEL020506-PA, AAEL020914-PA, AAEL021516-PA, AAEL020517-PA, AAEL021956-PA, AAEL021628-PA, AAEL020831-PA, AAEL021540-PA, AAEL003846-PA, AAEL021529-PA, AAEL020145-PA, AAEL021058-PA, AAEL020216-PA, AAEL021350-PA
Anopheles gambiae AGAMB AGAP010724-PA, AGAP012558-PA, AGAP012885-PA, AGAP012574-PA, AGAP005023-PA, AGAP012586-PA, AGAP005026-PA, AGAP003909-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation