Gene loci information

Isoforms of this gene

  • There are 1 isoforms that are expressed from this gene.
  • The longest transcript is g5738.t1
  • List of isoforms

g5738.t1

The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively.

KEGG

Orthology

This gene did not have any KEGG Ortholog annotations (KAAS, GHOSTZ).

Gene conservation patterns

Diptera wide analysis

The Orthogroup for the longest transcript (g5738.t1) is OG0000053. Other genes in this orthogroup contains the following. This list is ordered by phylogeny determined by OrthoFinder analysis. Genes from ENSEMBL are linked to their corresponding pages. For P. nubifer and P. vanderplanki, they are linked to the Midgebase1 and Midgebase2 pages.

Conservation

Organism Abb. ID No. Orthologs Ortholog ID
Atta cephalotes ACEPH 0 none
Apis mellifera AMELL 1 GB50088-PA
Culicoides sonorensis CSONO 0 none
Polypedilum nubifer PNUBI 24 Pn.11081, Pn.12303, Pn.06366, Pn.13165, Pn.08014, Pn.09255, Pn.03971, Pn.03541, Pn.05096, Pn.03540, Pn.02440, Pn.03538, Pn.03436, Pn.11051, Pn.06086, Pn.12180, Pn.02439, Pn.03434, Pn.04856, Pn.02438, Pn.16419, Pn.03533, Pn.03539, Pn.16627
Polypedilum vanderplanki PVAND 28 g13294.t1, g5412.t1, g10773.t1, g10772.t1, g13577.t1, g10776.t1, g10774.t1, g15486.t1, g12623.t1, g4066.t1, g10771.t1, g4067.t1, g13578.t1, g5738.t1, g10770.t1, g10780.t1, g11895.t1, g12735.t1, g988.t1, g15100.t1, g13579.t1, g4068.t1, g14641.t1, g10775.t2, g10769.t1, g1925.t1, g5411.t1, g14640.t1
Polypedilum pembai PPEMB 19 g9942.t1, g4436.t1, g15036.t1, g12508.t1, g1388.t1, g7269.t1, g1908.t1, g4438.t1, g11139.t1, g6268.t1, g7097.t1, g7640.t1, g11308.t1, g4435.t1, g15034.t1, g11140.t1, g12743.t1, g15035.t1, g6280.t1
Belgica antarctica BANTA 19 IU25_11039-mRNA-1, IU25_07427-mRNA-1, IU25_07397-mRNA-1, IU25_12516-mRNA-1, IU25_02146-mRNA-1, IU25_07478-mRNA-1, IU25_12898-mRNA-1, IU25_07021-mRNA-1, IU25_03984-mRNA-1, IU25_07392-mRNA-1, IU25_12593-mRNA-1, IU25_04527-mRNA-1, IU25_05983-mRNA-1, IU25_01980-mRNA-1, IU25_04753-mRNA-1, IU25_01979-mRNA-1, IU25_11685-mRNA-1, IU25_01981-mRNA-1, IU25_07702-mRNA-1
Clunio marinus CMARI 47 CRK97568.1, CRK90890.1, CRK90109.1, CRL04605.1, CRK90114.1, CRK87192.1, CRK97647.1, CRK94937.1, CRK93533.1, CRL04595.1, CRL04606.1, CRK87648.1, CRK92117.1, CRK90115.1, CRL04599.1, CRK90108.1, CRK90889.1, CRK97645.1, CRK90901.1, CRK93730.1, CRK90110.1, CRK90113.1, CRL07553.1, CRK90117.1, CRL01895.1, CRK97648.1, CRL04593.1, CRK92013.1, CRK87649.1, CRK87277.1, CRK90896.1, CRK90111.1, CRK90116.1, CRK90892.1, CRK97644.1, CRK90891.1, CRK90118.1, CRK90900.1, CRK90899.1, CRK90898.1, CRK90112.1, CRK94419.1, CRK90894.1, CRK90895.1, CRK90902.1, CRL05323.1, CRK97646.1
Aedes aegypti lvpagwg AAEGYL 10 AAEL014686-PB, AAEL027719-PA, AAEL003341-PB, AAEL000462-PB, AAEL028238-PA, AAEL015149-PA, AAEL003329-PA, AAEL003353-PA, AAEL003340-PA, AAEL015150-PA
Culex quinquefasciatus quinquefasciatus CQUINQ 4 EDS42301.1, EDS42302.1, EDS27852.1, EDS28000.1
Culex quinquefasciatus CQUIN 4 CPIJ014667-PA, CPIJ014668-PA, CPIJ018164-PA, CPIJ006402-PA
Anopheles atroparvus AATRO 5 AATE021788-PA, AATE018677-PA, AATE017047-PA, AATE021789-PA, AATE021787-PA
Anopheles sinensis china ASINEC 6 ASIC009682-PA, ASIC009678-PA, ASIC009680-PA, ASIC009675-PA, ASIC009681-PA, ASIC009676-PA
Anopheles dirus ADIRU 4 ADIR000875-PA, ADIR000872-PA, ADIR000871-PA, ADIR000873-PA
Anopheles farauti AFARA 5 AFAF007448-PA, AFAF011751-PA, AFAF014587-PA, AFAF018501-PA, AFAF017584-PA
Anopheles epiroticus AEPIR 4 AEPI010246-PA, AEPI010245-PA, AEPI010244-PA, AEPI010243-PA
Anopheles christyi ACHRI 4 ACHR004480-PA, ACHR004479-PA, ACHR004478-PA, ACHR004477-PA
Anopheles merus AMERU 4 AMEM016607-PA, AMEM006862-PA, AMEM008929-PA, AMEM016066-PA
Anopheles melas AMELA 6 AMEC018010-PA, AMEC003084-PA, AMEC011662-PA, AMEC006397-PA, AMEC021902-PA, AMEC020043-PA
Anopheles arabiensis AARAB 5 AARA010334-PA, AARA017462-PA, AARA017461-PA, AARA017464-PA, AARA017463-PA
Anopheles coluzzii ACOLU 3 ACOM036390-PA, ACOM036385-PA, ACOM036391-PA
Anopheles coluzzii ngousso ACOLUN 5 ACON013172-PA, ACON013520-PA, ACON013154-PA, ACON013409-PA, ACON000714-PA
Anopheles gambiae AGAMB 5 AGAP013520-PA, AGAP013172-PA, AGAP000714-PA, AGAP013409-PA, AGAP013154-PA
Anopheles quadriannulatus AQUAD 4 AQUA005797-PA, AQUA005796-PA, AQUA005798-PA, AQUA005799-PA
Anopheles minimus AMINI 3 AMIN005183-PA, AMIN005186-PA, AMIN005185-PA
Anopheles culicifacies ACULI 5 ACUA024682-PA, ACUA018931-PA, ACUA016589-PA, ACUA000818-PA, ACUA027975-PA
Anopheles funestus AFUNE 3 AFUN011601-PA, AFUN020699-PA, AFUN022308-PA
Anopheles stephensi indian ASTEPI 3 ASTEI04444-PA, ASTEI04442-PA, ASTEI04443-PA
Anopheles stephensi ASTEP 5 ASTE006175-PA, ASTE006174-PA, ASTE006173-PA, ASTE006172-PA, ASTE006177-PA
Anopheles albimanus AALBI 4 AALB006387-PA, AALB006274-PA, AALB006386-PA, AALB003066-PA
Anopheles darlingi ADARL 2 ADAC004303-PA, ADAC000312-PA
Drosophila willistoni DWILL 4 FBpp0375131, FBpp0254152, FBpp0239260, FBpp0254154
Drosophila pseudoobscura DPSEU 5 FBpp0281332, FBpp0337387, FBpp0275882, FBpp0335626, FBpp0330202
Drosophila persimilis DPERS 4 FBpp0178698, FBpp0178842, FBpp0178843, FBpp0178693
Drosophila ananassae DANAN 5 FBpp0343319, FBpp0349491, FBpp0348012, FBpp0124224, FBpp0348025
Drosophila melanogaster DMELA 5 FBpp0288951, FBpp0288950, FBpp0071044, FBpp0071043, FBpp0307900
Drosophila sechellia DSECH 4 FBpp0193454, FBpp0193449, FBpp0193445, FBpp0193455
Drosophila simulans DSIMU 5 FBpp0315941, FBpp0325816, FBpp0318067, FBpp0318058, FBpp0314949
Drosophila erecta DEREC 5 FBpp0372674, FBpp0138209, FBpp0136151, FBpp0365262, FBpp0136150
Drosophila yakuba DYAKU 5 FBpp0352445, FBpp0353575, FBpp0364344, FBpp0363781, FBpp0260750
Drosophila virilis DVIRI 6 FBpp0393570, FBpp0395431, FBpp0230090, FBpp0400984, FBpp0398123, FBpp0230323
Drosophila mojavensis DMOJA 5 FBpp0384995, FBpp0382540, FBpp0388115, FBpp0165551, FBpp0165432
Drosophila grimshawi DGRIM 9 FBpp0146493, FBpp0146265, FBpp0146026, FBpp0421605, FBpp0146498, FBpp0405374, FBpp0146031, FBpp0414564, FBpp0406329
Lucilia cuprina LCUPR 5 KNC22586, KNC22560, KNC22566, KNC22605, KNC22561
Musca domestica MDOME 11 MDOA003336-PA, MDOA007088-PA, MDOA016549-PA, MDOA015382-PB, MDOA005930-PA, MDOA016495-PA, MDOA004469-PB, MDOA005099-PA, MDOA007005-PA, MDOA007819-PA, MDOA005477-PB
Stomoxys calcitrans SCALC 19 SCAU015679-PA, SCAU013376-PA, SCAU000994-PA, SCAU008771-PA, SCAU013502-PA, SCAU003363-PA, SCAU016956-PA, SCAU004747-PA, SCAU002548-PA, SCAU011335-PA, SCAU012873-PA, SCAU016360-PA, SCAU012394-PA, SCAU003998-PA, SCAU000048-PA, SCAU009190-PA, SCAU013707-PA, SCAU016951-PA, SCAU009697-PA
Glossina brevipalpis GBREV 0 none
Glossina palpalis GPALP 1 GPPI025987-PA
Glossina austeni GAUST 0 none
Glossina pallidipes GPALL 0 none
Glossina morsitans GMORS 0 none

Gene tree

Chironomidae-wide analysis

The Orthogroup for the longest transcript (g5738.t1) is OG0008392. Other genes in this orthogroup contains the following. [This data uses ab initio gene models predicted in Yoshida et al 2022, so most genes are not registered in public databases. Please contact the authors for more information on these data.]

Conservation

Organism Abb. ID Ortholog ID
Podonomus sp PODON TRINITY_DN12644_c0_g1_i10.p1
Parochlus steinenii PSTEI PSG09829
Trissopelopia nemorum TNEMO none
Paraheptagyia tonnoiri PTONN TRINITY_DN7088_c0_g1_i1.p1
Telmatogeton pecinata TPECI TRINITY_DN395_c0_g3_i3.p1
Cricotopus draysoni CDRAY TRINITY_DN79960_c0_g1_i1.p1, TRINITY_DN110406_c0_g1_i1.p1
Clunio marinus CMARI CRK93532.1
Cardiocladius sp CARDI TRINITY_DN12051_c0_g1_i1.p1
Belgica antarctica BANTA IU25_02980-mRNA-1
Kiefferophyes invenustulus KINVE TRINITY_DN46392_c0_g2_i1.p1, TRINITY_DN32626_c0_g1_i4.p1
Chironomus riparius CRIPA none
Chironomus columbiensis CCOLU TRINITY_DN16272_c0_g1_i5.p1
Chironomus tentans CTENT g1930.t1
Chironomus dilutus CDILU TRINITY_DN4261_c2_g1_i1.p1
Polypedilum nubifer PNUBI Pn.08015
Polypedilum vanderplanki PVAND g5739.t3, g5738.t1
Polypedilum pembai PPEMB g4004.t1
Culicoides sonorensis CSONO none
Aedes aegypti lvpagwg AAEGYL AAEL000600-PA
Anopheles gambiae AGAMB AGAP029558-PA

Gene tree

Expression profile for this gene

Gene-level expression profile

Raw TPM values

Expression profile of isoforms

A heatmap representing isoforms with TPM > 0 in at least one sample. Expression profiles were are clustered based on the spearman correlation